Concepts of de novo transcriptome assembly

de novo transcriptome assembly
rna-seq
trinity
Author

Rui Yang

Published

June 24, 2025

Modified

June 24, 2025

1 Introduction

There are several tools which can be used to perform de novo transcriptome assembly, such as Trinity.

Here, we only document some useful wiki pages which describe the de novo transcriptome assembly from vairous aspects, such as how to perform de novo transcriptome assembly with/without guided genome, assembly quality assessment, downstream analyses, etc.:

  1. Trinity wiki page and local archive

  2. Bandage wiki page and local archive